Dominic Monaghan’s character was killed off in Season Three by drowning in what amounted to a suicide mission. He died bravely aiding his fellow castaways in their never-ending attempt to get off the bizarre island. Why was this important character killed off?
As with other actors in the series, there may have been contract issues, popularity conflicts or actor's seeking other opportunities. Or, the writers needed to create "drama" to keep viewers watching from week to week. A cull of the main characters was a necessary evil.
When LOST started, Monaghan was in a relationship with his co-star, Evangeline Lily. Lily was a model. She had little acting experience when she was cast as the principal female lead in the show. As it was told from insiders, the original premise of the show had her character, Kate, being the leader of the survivors. Jack was supposed to have been killed off at the end of the pilot episode in order to grab the audience by the throat so prove the island was a dangerous place.
But the producers found Jack's character too appealing to let go so he was given a bigger, the focal role in the show. But Kate was always hanging around Jack as the principal female lead.
During the show, Lily broke up with Monaghan. Some believe it was due to Charlie’s lessening importance as the main character; he had been receiving much less screen time in the season before his demise. It could also stem from jealousy as Lily was receiving much more attention in the press from the beginning than he was - - - and the sudden popularity of the show must have added pressure to succeed.
But how Charlie had to die was maddening plot twist. The hokey idea that the underground station's code was musical notes (which apparently Charlie figured out quickly on his own) made Charlie the main character in that episode. He had to overcome his fear of swimming to dive deep below the water to get to the station. Then he had to fight off dangerous Others to send out a rescue signal. But when he got the message out, an explosion rocked the control room flooding the compartment. Everyone saw that Charlie had time to escape, but he locked the door to prevent the station from flooding or harming Desmond. The last thing Charlie did was receive a message he wrote on his hand: NOT PENNY'S BOAT. It was a heroic demise when the waters engulfed him at the portal.
But Charlie could have opened the door to let the water rush into the very large open space of the station. He could have made it back to the open hole and swam out of the station. Most fans believed at the time it was an unnecessary character killing. Thus, there is a level of fan suspicion that there was another reason why Charlie left the show.
The character of Charlie had hit a dead end. The relationship with Claire, while special at the start, turning a boring pull-take romance that never got off the ground. Charlie's quest of having a trustworthy family blinded him from his true friendships. He never contributed a major "eureka" moment in the story lines. He was another downtrodden character, the LOST equivalent of a Star Trek red shirt.
We will never know the real reason Charlie got written out of the show. File it under the numerous "more questions than answers" bin.